miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|302109896|gb|GR895950.1|GR895950 CTTTCTCTTCACGAGGTGGGCGAGCGGTTTGGTGGCGGCGGCCTTGCGAGTTCCCCCTTGTACGCAGAAATGCAGATCTT
TGTGAAGACCCTGACGGGCCTAACTATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAAAATGTGAAAACCGAAATCC
AAGACAAGGAGGGCATCCCGCCTGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTAGAAGATGGACGAACTCTGTCA
GACTACAATATCCAGAAAGAGTCCACCTTGCACTTGGTGCTTCACCTGCGAGGTGGCATCATTGAGCCTTCACTCCGCCA
GCTGGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGTTATGCTCGCCTGCACCCCCGTGCTGTCAACTGCC
ACAAGAAGAAGTGCGGCCACACCAACAACCTGCGCCCCAGAAAGAAGGTCAAATAAGGCCCCTCCACCAGCTCTTCCTTT
GCCCGCAGGGCGGCCTCCTGCCCGAGCCTCAATATGTCCTGGGGCCTCAATAAAGTTTCCCTTTCATTGACTGGGACCCC
AATGGCCTTCCCCTGGAGGCACAAAAAAATCGTGAGGCAGAGGCAGGAGGAGCTGTGCCTG




Most similar to sp|P0C276|RL40_SHEEP

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P0C276|RL40_SHEEP Ubiquitin-60S ribosomal protein L40 OS=Ovis
           aries GN=UBA52 PE=2 SV=2
          Length = 128

 Score =  251 bits (642), Expect = 2e-66
 Identities = 122/128 (95%), Positives = 124/128 (96%)
 Frame = +1

Query: 70  MQIFVKTLTGLTITLEVEPSDTIENVKTEIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 249
           MQIFVKTLTG TITLEVEPSDTIENVK +IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 250 IQKESTLHLVLHLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCHKKKCGHTNN 429
           IQKESTLHLVL LRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNC KKKCGHTNN
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120

Query: 430 LRPRKKVK 453
           LRP+KKVK
Sbjct: 121 LRPKKKVK 128